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1.
What the Beans is a kid friendly way of saying, WHAT THE FUCK or WHAT THE TITTIES IN MOUTH. What the Beans is a hit with the children. Beans can replace almost any curse word, so it's very kid friendly.

WHAT THE BEANS can also be shown as WHAT THE B**NS
Timmy: "Fuck girl, you have nice tits"

Jessica: "Ew, what the fuck, don't you be staring at my tits you fucking beener."

Timmy: "Beans girl, you have nice beans"

Jessica: "Ew, what the beans!?, don't you be staring at my beans, you beansing beaner.
by Dinkleberry Dan May 01, 2011
 
2.
A funnier way of saying what the fuck :D
Jordan: hey Ryan yelled at me today!
Brad: what did he say
Jordan: he said stay away from my girl friend fag
Brad: what the beans is his problem!
Jordan: he has a midget scrodum
Brad: teehee!
Jordan: teehee!
by Aguymostproferably June 05, 2009